Homepage
Lab: 319-335-1083
Fax: 319-335-1069
Links
The University of Iowa Department of Biological Sciences , and College of Medicine Biosciences Program.Admissions, ISIS, Webmail, Courses for Biology, textbook search engine....
Thesis preparation: Graduate College, Thesis resources, Thesis deposit deadlines, First Deposit Checklist, Electronic Thesis Deposit (ETD), ETD requirements, Binding, Awards,
Carver Center for Comparative Genomics Sequencing, links.
Human Resources Self Service Portal (Timesheets, Workflow, etc)
Find misc. supplies at Biochem Stores, Fisher, VWR... Order primers at IDT or here...electronic media
Eppendorf Centrifuge RCF (x g) to speed calculator
Iowa, things to do in Iowa City, campus maps, Mapquest, Bus maps & schedules for Iowa City, Coralville, & Cambus
Travel: Office of International Students & Scholars (OISS), GSS travel funds, Currency Exchange, Metric Conversions, Kayak, Hotwire, Expedia, Orbitz
Resources for graduate students and post docs from Scott Keogh. Platt's points on Strong Inference.
U. Iowa Libraries: Biology, Health Sciences, electronic journals...
Protists (microscope project), Tree of Life, Evoldir,Church lab Long PCR recipe....
Zeiss microscope information
Online Statistics Website at Vassar College
Granting agencies: NSF, Howard Hughes, NIH, NSERC, CIHR or at this university
Logsdon Lab Bioinformatics Toolkit:Search engines: Google, Web of Science, J-Stor, National Center for Biotechnology Information (NCBI), Ask, Google Scholar, Wikipedia...
Database mining: Microbial genome data from The Institute for Genomic Research (TIGR), Sanger Center, BLAST NCBI Eukaryotes & Prokaryotes, PEPdb, Eukaryotic Genome Portal, JGI Genome Portal, PlasmoDB, ApiESTdb, ToxoDB, TcruziDB, NeuroGadgets, Inc. Bioinformatics Service, Galderia, Cyanidioschyzon, Paramecium, Acanthamoeba, EBI Parasites, ...
Explanations of a Genbank sequence file
Analytical Tools: CBS Bioinformatics tools (Denmark), Expasy (Switzerland), EMBnet, EMBOSS, European Bioinformatics Institute (EBI), HMMER
Sequence editing, contig assembly and multiple sequence alignment tools for PCs, Macs, & UNIX: Mek&Tosj, Sequencher, ClustalX (for OsX), MacClade, BioEdit (Windows), DAMBE (Windows), MEGA (Windows, UNIX & Mac-Virtual Windows), GDE (Genetic Data Environment) for Linux, MacGDE, Seqlab (X-windows interface for GCG)....
Computing (operating systems, file transfer, etc): Apple, MacTopia (Microsoft products for Macs), Mek&Tosj scientific software for MacOsX, Pooch for Mac parallel processing, secure shell telnet & file transfer for OsX (Fugu), for Mac Os9 (NiftytelnetSSH) and PCs, Linux/Unix (SSH)
U.Iowa Information Technology Service (ITS) and DERC Molecular Biology Computing
Software for phylogenetic analysis that work on PCs, Macs, & UNIX: PHYLIP, PAUP*, TREE-PUZZLE, TreeView, PAML, Mr. Bayes [online server, help: 1, 2, 3] , p4 (for rate variation along branches as well as sites; requires python), Modeltest & p-star (for choosing substitution models), and many others
More information: Molecular Systematics Course, Genetics Software Forum, NC State Summer Institute in Statistical Genetics, MBL Workshop on Molecular Evolution (UNIX & software help, glossary), books and software at Sinauer, PAUP* command blocks [1, 2, 3], UNIX help....
Society for Molecular Biology and Evolution, Society of Systematic Biologists, Society of Protozoologists, International Society for Evolutionary Protistology (ISEP), Genetics Society of Canada, University of Georgia's Center for Tropical & Emerging Global Disease (CTEGD)...
Journals: Nature, Science, Genetics, Evolution, Cell, Protist, Current Biology, Eukaryotic Cell, Journal of Molecular Evolution, Molecular Biology & Evolution, Molecular Phylogenetics & Evolution, Systematic Biology, Genome Biology, Journal of Eukaryotic Microbiology, Proceedings of the National Academy of Sciences, Trends in Genetics, Trends in Ecology and Evolution, International Journal of Systematic & Evolutionary Microbiology, BioMedCentral Journals....
Emory University Graduate Program in Population Biology, Ecology & Evolution (PBEE).Atlanta, Emory area map from AAA, Emory Webmail....
Emory University Libraries: catalog, electronic journals....
Emory's Biomolecular Computing Resource (BIMCORE), Berkeley Madonna for mathematical modelling
Maintained & modified by Shehrebanoo Malik, 16th March 2008.
